PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC650_p3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 217aa    MW: 24916.8 Da    PI: 5.479
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC650_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.12.3e-113982755
               HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH  7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
               e+ErrRR+++ s++  Lr+++P       + ++Ka+i+e A+ YI +Lq
  RrC650_p3 39 EAERRRREKLHSRLMALRSHVPIV-----TNMTKASIVEDAICYIGELQ 82
               79*********************8.....69***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.46E-113086No hitNo description
SuperFamilySSF474591.96E-153199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.2273281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-123498IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.0E-133887IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.3E-93982IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048658Biological Processanther wall tapetum development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MGGGGNRFQE PVRISRRRQV RKEKEEDEVN ESFKSPNLEA ERRRREKLHS RLMALRSHVP  60
IVTNMTKASI VEDAICYIGE LQKIVQSLTE KLHEMEEAPP EIDEQQTDHI IKPEVETIVL  120
KEEMKKLGIE ENVQLCKIGE RKFWLKITTE KKPGIFTKFM DVMSFMGFEI IDITLATSNG  180
AIIICSSVQI IQGLCDGDSV DLQQTKDFLL EVMRSNP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14045ERRRRE
24146RRRREK